| | Proto-North-Adelbert | T,
M,
Croisilles | 486 |
| mabu1247 | Proto-Mabuso | T,
M,
Croisilles | 484 |
| nucl1709 | Proto-Trans-New-Guinea | Trans-New Guinea | 360 |
| pnr | pani1258 | Panim | N,
M,
C,
M,
G,
Panim-Isebe-Bau | 355 |
| prw | para1307 | Parawen | N,
M,
C,
G,
N,
N,
Yarawata-Parawen-Ukuriguma | 345 |
| pmr | payn1244 | Paynamar | N,
M,
K,
S,
S,
A,
Greater West Sogeram | 335 |
| bina1279 | Proto-Binandere | N,
Greater Binanderean | 325 |
| abw | pall1244 | Pal | N,
M,
C,
Omosan | 324 |
| hih | pamo1253 | Pamosu | N,
M,
C,
G,
N,
K,
T,
Nuclear Tibor | 320 |
| grea1275 | Proto-Awyu | N,
A,
Awyu-Ok | 318 |
| ocea1241 | Proto-Oceanic | A,
M,
C,
E,
O,
(Proto) | 311 |
| pwa | pawa1255 | Pawaia | T,
Pawaian | 294 |
| sout3148 | Proto-South-Adelbert | T,
M,
South Adelbert Range | 289 |
| awyu1263 | Proto-Awyu-Dumut | N,
A,
A,
Greater Awyu | 287 |
| dumu1247 | Proto-Dumut | N,
A,
A,
G,
Awyu-Dumut | 282 |
| pup | pula1267 | Pulabu | T,
M,
R,
Kabenau | 277 |
| raic1241 | Proto-Rai-Coast | T,
M,
Rai Coast | 258 |
| ppt | pare1271 | Pare | K,
Elevala | 255 |
| mada1298 | Proto-Madang | T,
Madang | 251 |
| mari1439 | Proto-Maria | T,
S,
Manubaran | 190 |
| croi1234 | Proto-Croisilles | N,
Madang | 189 |
| doro1266 | Proto-Doromu | Manubaran | 179 |
| manu1261 | Proto-Manubaran | T,
S,
Manubaran | 171 |
| kwal1257 | Proto-Kwalean | T,
S,
Kwalean | 161 |
| tari1255 | Proto-Tariku | L,
Tariku | 138 |
| pby | pyuu1245 | Pyu | Language isolate | 136 |
| lake1255 | Proto-Lakes-Plain | Lakes Plain | 134 |
| lowe1437 | Proto-Lower-Sepik | R,
Lower Sepik | 134 |
| pnn | pina1252 | Pinai-Hagahai (Wakadadap Dialect) | Piawi | 130 |
| east2502 | Proto-East-Tariku | L,
Tariku | 130 |
| west2582 | Proto-West-Tariku | L,
T,
West | 129 |
| nucl1603 | Proto-Nuclear-Binandere | T,
G,
B,
Nuclear Binanderean | 124 |
| koia1260 | Proto-Koiarian | T,
S,
Koiarian | 124 |
| okok1235 | Proto-Ok-Oksapmin | T,
Ok-Awyu | 124 |
| pnn | pina1252 | Pinai-Hagahai (Nangenuwetan Dialect) | Piawi | 117 |
| numu1240 | Proto-Tibor-Omosa | T,
M,
C,
Pihom | 117 |
| farw1236 | Proto-Far West | Lakes Plain | 117 |
| pnn | pina1252 | Pinai-Hagahai (Aramo Dialect) | Piawi | 114 |
| ppe | papi1255 | Papi | S,
S,
Papi | 107 |
| soge1235 | Proto-Sogeram | T,
M,
S,
+Sogeram | 103 |
| | Proto-Central-Sogeram | T,
M,
S,
+,
Central | 102 |
| cent2110 | Proto-Central-Tariku | L,
Tariku | 101 |
| iar | pura1257 | Purari | T,
E,
Purari | 100 |
| bara1376 | Proto-Baraic | Koiarian | 99 |
| koia1261 | Proto-Koiariac | Koiarian | 85 |
| goro1272 | Proto-Eastern-Central | N,
Kainantu-Goroka | 76 |
| east2767 | Proto-Eastern-Sogeram | N,
M,
K,
S,
Sogeram | 74 |
| nucl1580 | Proto-Eleman | T,
Eleman | 67 |
| atan1241 | Proto-Western-Sogeram | T,
M,
S,
+,
Western | 62 |
| numu1240 | Proto-Numugen | T,
M,
C,
P,
Numugenan | 59 |
